Publications

2019

  • Loic Le Folgoc, Daniel C. Castro, Jeremy Tan, Bishesh Khanal, Konstantinos Kamnitsas, Ian Walker, Amir Alansary, and Ben Glocker. Controlling meshes via curvature: spin transformations for pose-invariant shape processing. In The 26th international conference on Information Processing in Medical Imaging (IPMI) June 2-7. 2019. Accepted.
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2018

  • Bishesh Khanal, Alberto Gomez, Nicolas Toussaint, Steven McDonagh, Veronika Zimmer, Emily Skelton, Jacqueline Matthew, Daniel Grzech, Robert Wright, Chandni Gupta, Benjamin Hou, Daniel Rueckert, Julia A. Schnabel, and Bernhard Kainz. Echofusion: tracking and reconstruction of objects in 4d freehand ultrasound imaging without external trackers. In MICCAI 2018 Workshop on Perinatal, Preterm and Paediatric Image analysis, Granada, Spain. 2018.
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  • Robert Wright, Bishesh Khanal, Alberto Gomez, Emily Skelton, Jacqueline Matthew, Joseph Hajnal, Daniel Rueckert, and Julia Schnabel. Lstm spatial co-transformer networks for registration of 3d fetal us and mr brain images. In MICCAI 2018 Workshop on Perinatal, Preterm and Paediatric Image analysis, Granada, Spain. 2018.
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  • Veronika Zimmer, Alberto Gomez, Nicolas Toussaint, Bishesh Khanal, Robert Wright, Laura Peralta-Pereira, Milou Van-Poppel, Emily Skelton, Jacqueline Matthew, and Julia Schnabel. Multi-view image reconstruction: application to fetal ultrasound compounding. In MICCAI 2018 Workshop on Perinatal, Preterm and Paediatric Image analysis, Granada, Spain. 2018.
    [abstract▼] [BibTeX▼]
  • Nicolas Toussaint, Bishesh Khanal, Emily Skelton, Jacqueline Matthew, Alberto Gomez, Matthew Sinclair, Bernhard Kainz, and Julia Schnabel. Weakly supervised localisation for fetal ultrasound images. In MICCAI 2018 Workshop on Deep Learning in Medical Image Analysis, Granada, Spain. 2018.
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  • Yuanwei Li, Amir Alansary, Juan Cerrolaza, Bishesh Khanal, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline Knight, Bernhard Kainz, and Daniel Rueckert. Fast multiple landmark localisation using a patch-based iterative network. In MICCAI. 2018.
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  • Yuanwei Li, Bishesh Khanal, Benjamin Hou, Amir Alansary, Juan Cerrolaza, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline Knight, Bernhard Kainz, and Daniel Rueckert. Standard plane detection in 3d fetal ultrasound using an iterative transformation network. In MICCAI. 2018.
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  • Benjamin Hou, Nina Miolane, Bishesh Khanal, Matthew CH Lee, Amir Alansary, Steven McDonagh, Jo V Hajnal, Daniel Rueckert, Ben Glocker, and Bernhard Kainz. Computing cnn loss and gradients for pose estimation with riemannian geometry. In MICCAI. 2018.
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  • B. Hou, B. Khanal, A. Alansary, S. McDonagh, A. Davidson, M. Rutherford, J. V. Hajnal, D. Rueckert, B. Glocker, and B. Kainz. 3d reconstruction in canonical co-ordinate space from arbitrarily oriented 2d images. IEEE Transactions on Medical Imaging, PP(99):1–1, 2018. URL: http://ieeexplore.ieee.org/document/8295121/, doi:10.1109/TMI.2018.2798801.
    [abstract▼] [BibTeX▼]
  • Alberto Gomez, Veronika A Zimmer, Bishesh Khanal, Nicolas Toussaint, and Julia A Schnabel. Oversegmenting graphs. arXiv preprint arXiv:1806.00411, 2018. preprint, in preparation.
    [abstract▼] [full text] [BibTeX▼]

2017

  • Bishesh Khanal, Nicholas Ayache, and Xavier Pennec. Simulating longitudinal brain mris with known volume changes and realistic variations in image intensity. Frontiers in Neuroscience, 11:132, 2017. URL: http://journal.frontiersin.org/article/10.3389/fnins.2017.00132, doi:10.3389/fnins.2017.00132.
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2016

  • Bishesh Khanal. Modeling and simulation of realistic longitudinal structural brain MRIs with atrophy in Alzheimer's disease. PhD thesis, Université Nice Sophia Antipolis, July 2016.
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  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. A biophysical model of brain deformation to simulate and analyze longitudinal mris of patients with alzheimer's disease. NeuroImage, 134():35 – 52, 2016. URL: http://www.sciencedirect.com/science/article/pii/S1053811916300052, doi:10.1016/j.neuroimage.2016.03.061.
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2015

  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Simulating patient specific multiple time-point mris from a biophysical model of brain deformation in alzheimer's disease. In Grand Joldes, Barry Doyle, Adam Wittek, Poul M. F. Nielsen, and Karol Miller, editors, A MICCAI Workshop on Computational Biomechanics for Medicine-X, 2015, Munich, Germany, Computational Biomechanics for Medicine: Imaging, Modeling and Computing, 177–186. Springer International Publishing AG, 2015. doi:10.1007/978-3-319-28329-6.
    [abstract▼] [full text] [BibTeX▼]

2014

  • Nina Miolane and Bishesh Khanal. Statistics on lie groups for computational anatomy. In Educational Video Challenge of Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, Boston, USA. 2014. video, 1st WON POPULAR PRIZE. URL: http://www.miccai.org/edu/videos.html#mec2014winners.
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  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease. In Polina Golland, Nobuhiko Hata, Christian Barillot, Joachim Hornegger, and Robert Howe, editors, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, Boston, USA, volume 8674 of Lecture Notes in Computer Science, 41–48. Springer International Publishing, 2014. URL: http://dx.doi.org/10.1007/978-3-319-10470-6_6, doi:10.1007/978-3-319-10470-6_6.
    [abstract▼] [full text] [BibTeX▼]

2012

  • Bishesh Khanal, Sharib Ali, and Désiré Sidibé. Robust road signs segmentation in color images. In Proceedings of the International Conference on Computer Vision Theory and Applications, 2012, Rome, Italy, 307–310. 2012. doi:10.5220/0003802103070310.
    [abstract▼] [full text] [BibTeX▼]

2011

  • Bishesh Khanal and Désiré Sidibé. Efficient skin detection under severe illumination changes and shadows. In Sabina Jeschke, Honghai Liu, and Daniel Schilberg, editors, Intelligent Robotics and Applications: 4th International Conference, ICIRA 2011, Aachen, Germany, December 6-8, 2011, Proceedings, Part II, 609–618. Berlin, Heidelberg, 2011. Springer Berlin Heidelberg. URL: http://dx.doi.org/10.1007/978-3-642-25489-5_59, doi:10.1007/978-3-642-25489-5_59.
    [abstract▼] [full text] [BibTeX▼]